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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.
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The high-resolution cell cycle timing data
6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
CMP2YML057Wcytoplasmphosphate utilization; transcriptional control; modification by phosphorylation, dephosphorylation, autophosphorylation; calcium binding; modification; enzymatic activity regulation / enzyme regulator; protein kinase cascades; ionic homeostasis; pheromone response, mating-type determination, sex-specific proteins; cell growth / morphogenesisCalcineurin A2.843.182.711.74
ERG3YLR056WERtetracyclic and pentacyclic triterpenes (cholesterin, steroids and hopanoids) biosynthesisC-5 sterol desaturase8.023.973.373.19****
RPL11BYGR085Ccytoplasmribosomal proteinsProtein component of the large (60S) ribosomal subunit4.583.872.93-*
YJR015WYJR015WER, cytoplasmdetoxificationPutative protein of unknown function3.283.342.131.50**
YOL029CYOL029CUnclassified ProteinsPutative protein of unknown function3.522.392.19-*
YOR008C-AYOR008C-AUnclassified Proteinsdiepoxybutane and mitomycin C resistance15.653.25-2.78
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Concentration of mRNA, linear scale, normalized to unit average:







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 Correlations in YMC:
CMP2ERG3RPL11BYJR015WYOL029CYOR008C-A
CMP21.00-0.45-0.60-0.30-0.42-0.33
ERG3-0.451.000.720.610.680.20
RPL11B-0.600.721.000.660.730.41
YJR015W-0.300.610.661.000.610.34
YOL029C-0.420.680.730.611.000.29
YOR008C-A-0.330.200.410.340.291.00
 Correlations in cdc15:
CMP2ERG3RPL11BYJR015WYOL029CYOR008C-A
CMP21.000.460.35-0.22-0.49-0.34
ERG30.461.000.080.450.260.16
RPL11B0.350.081.00-0.55-0.33-0.49
YJR015W-0.220.45-0.551.000.500.41
YOL029C-0.490.26-0.330.501.000.58
YOR008C-A-0.340.16-0.490.410.581.00
 Correlations in cdc28:
CMP2ERG3RPL11BYJR015WYOL029CYOR008C-A
CMP21.000.380.050.100.02ERR
ERG30.381.000.860.120.55ERR
RPL11B0.050.861.00-0.190.21ERR
YJR015W0.100.12-0.191.000.34ERR
YOL029C0.020.550.210.341.00ERR
YOR008C-AERRERRERRERRERRERR
 Correlations in alpha-38:
CMP2ERG3RPL11BYJR015WYOL029CYOR008C-A
CMP21.00-0.38ERR-0.66ERR-0.49
ERG3-0.381.00ERR0.58ERR-0.03
RPL11BERRERRERRERRERRERR
YJR015W-0.660.58ERR1.00ERR0.28
YOL029CERRERRERRERRERRERR
YOR008C-A-0.49-0.03ERR0.28ERR1.00
UT MEDICAL BRANCH Citation YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab UT SOUTHWESTERN
2005-2010 Andrzej Kudlicki
a.kudlicki@utmb.edu