Yeast periodic transcription: Cell cycle and metabolic oscillation.

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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast

Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.

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The high-resolution cell cycle timing data

6 genes

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hide gene table					max/min ratio				regulated
Name	Id	Localization	Function	Description	YMC	cdc15	cdc28	alpha-38	T	C	S	P	R	X	SGD
GCN1	YGL195W	cytoplasm	translational control	Positive regulator of the Gcn2p kinase activity	3.89	4.08	1.80	1.60	*		*
SNA4	YDL123W	vacuolar membrane	Unclassified Proteins	Protein of unknown function	4.41	3.78	1.99	1.47	*
SPB4	YFL002C	nucleolus, nucleus	rRNA processing; ribosomal proteins; ATP binding	Putative ATP-dependent RNA helicase	8.10	3.75	1.96	1.75
UTR1	YJR049C	cytoplasm, nucleus	nucleotide mtbl; phosphate utilization; mtbl of vitamins, cofactors, prosth. grps; homeostasis of metal ions (Na, K, Ca etc.)	ATP-NADH kinase	3.06	2.85	1.79	-	*
YLR125W	YLR125W		Unclassified Proteins	Putative protein of unknown function	10.76	2.89	1.99	2.53	*
YMR153C-A	YMR153C-A		Unclassified Proteins	Dubious open reading frame unlikely to encode a protein	3.34	-	-	2.37