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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.

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The high-resolution cell cycle timing data
6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
ACP1YKL192Cmitochondrionfatty acid biosynthesis; lipid transportMitochondrial matrix acyl carrier protein4.293.162.032.88*
ATP3YBR039Wmitochondrionelectr transpt and membr.-assoc'd energy; respiration; energy generation (e.g. ATP synthase); cation transport (Na, K, Ca , NH4, etc.); electron / hydrogen transport; transport ATPases; mitochondrial transport; homeostasis of protonsGamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase3.34-2.602.35*
OSH3YHR073Wambiguoustetracyclic and pentacyclic triterpenes (cholesterin, steroids and hopanoids) biosynthesisMember of an oxysterol-binding protein family with seven members in S. cerevisiae3.471.871.672.42
SNR78SNR78C/D box small nucleolar RNA (snoRNA), guides 2'-O-methylation of large subunit (LSU) rRNA at position U242190.69---
X04603X046037.64---
YERWDELTA7YERWDELTA74.94---
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Concentration of mRNA, linear scale, normalized to unit average:







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 Correlations in YMC:
ACP1ATP3OSH3SNR78X04603YERWDELTA7
ACP11.000.750.25-0.03-0.180.12
ATP30.751.000.22-0.160.010.41
OSH30.250.221.000.14-0.250.21
SNR78-0.03-0.160.141.000.16-0.22
X04603-0.180.01-0.250.161.00-0.11
YERWDELTA70.120.410.21-0.22-0.111.00

 Correlations in cdc15:
ACP1ATP3OSH3SNR78X04603YERWDELTA7
ACP11.00ERR0.03ERRERRERR
ATP3ERRERRERRERRERRERR
OSH30.03ERR1.00ERRERRERR
SNR78ERRERRERRERRERRERR
X04603ERRERRERRERRERRERR
YERWDELTA7ERRERRERRERRERRERR

 Correlations in cdc28:
ACP1ATP3OSH3SNR78X04603YERWDELTA7
ACP11.000.29-0.11ERRERRERR
ATP30.291.00-0.15ERRERRERR
OSH3-0.11-0.151.00ERRERRERR
SNR78ERRERRERRERRERRERR
X04603ERRERRERRERRERRERR
YERWDELTA7ERRERRERRERRERRERR

 Correlations in alpha-38:
ACP1ATP3OSH3SNR78X04603YERWDELTA7
ACP11.00-0.480.23ERRERRERR
ATP3-0.481.000.07ERRERRERR
OSH30.230.071.00ERRERRERR
SNR78ERRERRERRERRERRERR
X04603ERRERRERRERRERRERR
YERWDELTA7ERRERRERRERRERRERR

UT MEDICAL BRANCH Citation YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab UT SOUTHWESTERN
2005-2010 Andrzej Kudlicki
a.kudlicki@utmb.edu