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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.

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The high-resolution cell cycle timing data
6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
DEP1YAL013Wregulation of lipid, fatty acid and isoprenoid mtbl; transcriptional controlTranscriptional modulator involved in regulation of structural phospholipid biosynthesis genes and metabolically unrelated genes2.151.662.811.69
OXR1YPL196Woxydative stress responseProtein of unknown function required for normal levels of resistance to oxidative damage4.852.431.751.73*
TIF5YPR041Wcytoplasmribosome biogenesis; translation initiation; translational control; GTPase activator (GAP)Translation initiation factor eIF-58.624.112.063.75*
YHR126CYHR126CUnclassified ProteinsHypothetical protein109.093.0516.93144.50**
YML037CYML037Clate GolgiUnclassified ProteinsPutative protein of unknown function with some characteristics of a transcriptional activator4.432.482.573.59
YPL110CYPL110CcytoplasmUnclassified ProteinsGlycerophosphocholine (GroPCho) phosphodiesterase2.272.701.871.83
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Concentration of mRNA, linear scale, normalized to unit average:







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 Correlations in YMC:
DEP1OXR1TIF5YHR126CYML037CYPL110C
DEP11.00-0.160.090.380.260.24
OXR1-0.161.00-0.67-0.580.080.39
TIF50.09-0.671.000.78-0.05-0.67
YHR126C0.38-0.580.781.000.13-0.29
YML037C0.260.08-0.050.131.000.16
YPL110C0.240.39-0.67-0.290.161.00

 Correlations in cdc15:
DEP1OXR1TIF5YHR126CYML037CYPL110C
DEP11.000.010.220.540.02-0.41
OXR10.011.000.03-0.51-0.06-0.09
TIF50.220.031.000.76-0.080.00
YHR126C0.54-0.510.761.000.54-0.18
YML037C0.02-0.06-0.080.541.000.10
YPL110C-0.41-0.090.00-0.180.101.00

 Correlations in cdc28:
DEP1OXR1TIF5YHR126CYML037CYPL110C
DEP11.000.090.31-0.58-0.140.22
OXR10.091.00-0.21-0.060.14-0.02
TIF50.31-0.211.000.21-0.39-0.22
YHR126C-0.58-0.060.211.00-0.440.17
YML037C-0.140.14-0.39-0.441.000.11
YPL110C0.22-0.02-0.220.170.111.00

 Correlations in alpha-38:
DEP1OXR1TIF5YHR126CYML037CYPL110C
DEP11.000.040.130.48-0.08-0.14
OXR10.041.00-0.13-0.01-0.060.38
TIF50.13-0.131.000.090.59-0.27
YHR126C0.48-0.010.091.00-0.17-0.05
YML037C-0.08-0.060.59-0.171.00-0.10
YPL110C-0.140.38-0.27-0.05-0.101.00

UT MEDICAL BRANCH Citation YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab UT SOUTHWESTERN
2005-2010 Andrzej Kudlicki
a.kudlicki@utmb.edu