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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.

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The high-resolution cell cycle timing data
6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
FYV8YGR196CUnclassified ProteinsProtein of unknown function2.452.071.851.45
NAB3YPL190Cnucleustranscriptional control; mRNA processing (splicing, 5'-, 3'-end processing); RNA binding; RNA transportSingle stranded RNA binding protein2.882.031.351.82
SCO2YBR024Wtranslational control; assembly of protein complexes; heavy metal ion transport (Cu, Fe, etc.); homeostasis of metal ions (Na, K, Ca etc.)Protein anchored to the mitochondrial inner membrane5.73-2.60-*
VMA4YOR332Wvacuolar membraneassembly of protein complexes; cation transport (Na, K, Ca , NH4, etc.); electron / hydrogen transport; transport ATPases; vacuolar transport; homeostasis of protonsSubunit E of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase)2.194.692.673.08**
YJL015CYJL015CUnclassified ProteinsHypothetical protein7.092.602.362.53**
YJR041CYJR041Cnucleolusribosome biogenesisNucleolar protein required for normal metabolism of the rRNA primary transcript18.802.273.553.11
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Concentration of mRNA, linear scale, normalized to unit average:







hide correlation table
 Correlations in YMC:
FYV8NAB3SCO2VMA4YJL015CYJR041C
FYV81.000.280.18-0.270.30-0.43
NAB30.281.000.43-0.340.58-0.45
SCO20.180.431.00-0.330.06-0.69
VMA4-0.27-0.34-0.331.00-0.280.53
YJL015C0.300.580.06-0.281.00-0.17
YJR041C-0.43-0.45-0.690.53-0.171.00

 Correlations in cdc15:
FYV8NAB3SCO2VMA4YJL015CYJR041C
FYV81.00-0.04ERR0.32-0.17-0.31
NAB3-0.041.00ERR-0.510.350.31
SCO2ERRERRERRERRERRERR
VMA40.32-0.51ERR1.00-0.34-0.13
YJL015C-0.170.35ERR-0.341.000.46
YJR041C-0.310.31ERR-0.130.461.00

 Correlations in cdc28:
FYV8NAB3SCO2VMA4YJL015CYJR041C
FYV81.000.26-0.09-0.32-0.640.34
NAB30.261.00-0.33-0.21-0.300.36
SCO2-0.09-0.331.000.070.33-0.51
VMA4-0.32-0.210.071.000.08-0.77
YJL015C-0.64-0.300.330.081.00-0.10
YJR041C0.340.36-0.51-0.77-0.101.00

 Correlations in alpha-38:
FYV8NAB3SCO2VMA4YJL015CYJR041C
FYV81.000.38ERR-0.24-0.380.36
NAB30.381.00ERR-0.65-0.680.68
SCO2ERRERRERRERRERRERR
VMA4-0.24-0.65ERR1.000.81-0.75
YJL015C-0.38-0.68ERR0.811.00-0.87
YJR041C0.360.68ERR-0.75-0.871.00

UT MEDICAL BRANCH Citation YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab UT SOUTHWESTERN
2005-2010 Andrzej Kudlicki
a.kudlicki@utmb.edu