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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.
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The high-resolution cell cycle timing data
6 genes   

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Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
ASM4YDL088Cnuclear peripheryDNA repair; protein targeting, sorting and translocation; structural protein; protein transport; RNA transport; nuclear transport; nuclear membraneNuclear pore complex subunit3.752.041.833.18
SMY2YBR172Ccytoplasmcytoskeleton-dependent transport; cytoskeletonProtein of unknown function that interacts with Myo2p7.392.811.75-*
SPT7YBR081CnucleusDNA conformation modification (e.g. chromatin); transcriptional control; modification by acetylation, deacetylation; assembly of protein complexes; structural protein; mating (fertilization); organization of chromosome structureSubunit of the SAGA transcriptional regulatory complex2.062.891.741.61
VIP1YLR410Wcytoplasmmodification by acetylation, deacetylation; actin cytoskeletonProtein of unknown function probably involved in the function of the cortical actin cytoskeleton2.192.351.522.45
YGL085WYGL085WmitochondrionUnclassified ProteinsPutative protein of unknown function3.651.591.73-
YNR005CYNR005CUnclassified ProteinsHypothetical protein16.212.174.003.33
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Concentration of mRNA, linear scale, normalized to unit average:







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 Correlations in YMC:
ASM4SMY2SPT7VIP1YGL085WYNR005C
ASM41.000.610.110.470.110.13
SMY20.611.000.280.350.46-0.09
SPT70.110.281.000.09-0.010.31
VIP10.470.350.091.00-0.090.28
YGL085W0.110.46-0.01-0.091.00-0.28
YNR005C0.13-0.090.310.28-0.281.00
 Correlations in cdc15:
ASM4SMY2SPT7VIP1YGL085WYNR005C
ASM41.000.67-0.160.09-0.540.50
SMY20.671.00-0.210.22-0.300.20
SPT7-0.16-0.211.000.080.32-0.04
VIP10.090.220.081.000.110.05
YGL085W-0.54-0.300.320.111.00-0.11
YNR005C0.500.20-0.040.05-0.111.00
 Correlations in cdc28:
ASM4SMY2SPT7VIP1YGL085WYNR005C
ASM41.00-0.050.540.030.17-0.13
SMY2-0.051.000.07-0.24-0.07-0.20
SPT70.540.071.00-0.02-0.040.34
VIP10.03-0.24-0.021.00-0.600.25
YGL085W0.17-0.07-0.04-0.601.00-0.25
YNR005C-0.13-0.200.340.25-0.251.00
 Correlations in alpha-38:
ASM4SMY2SPT7VIP1YGL085WYNR005C
ASM41.00ERR0.300.43ERR-0.66
SMY2ERRERRERRERRERRERR
SPT70.30ERR1.000.06ERR-0.53
VIP10.43ERR0.061.00ERR-0.48
YGL085WERRERRERRERRERRERR
YNR005C-0.66ERR-0.53-0.48ERR1.00
UT MEDICAL BRANCH Citation YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab UT SOUTHWESTERN
2005-2009 Andrzej Kudlicki
a.kudlicki@utmb.edu