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The Bonferroni correction option allows to select genes by periodicity with or without correcting the p-value for hypotheses including possible multiple independent frequencies

SCEPTRANS - Saccharomyces Cerevisiae  Periodic Transcription Server

Cell cycle and metabolic cycle regulated gene expression in yeast
Citation: Kudlicki A, Rowicka M, Otwinowski Z (2007), Bioinformatics 23: 1559-1561.

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The high-resolution cell cycle timing data
6 genes   

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hide gene tablemax/min ratioregulated
Name Id Localization Function  Description YMCcdc15cdc28alpha-38TCSPRX SGD   
RCS1YGL071Wcytoplasm, nucleustranscriptional control; siderophore-iron transport; homeostasis of metal ions (Na, K, Ca etc.)Transcription factor involved in iron utilization and homeostasis2.711.921.722.32*
RDN5-3RDN5-35S ribosomal RNA, component of the large (60S) ribosomal subunit; localized to the nucleolus via interaction with Rpl5p; may play a role in maintenance of translational frame; transcription is mediated by PolIII and activated by TFIIIA5.88---
TR(ACG)DTR(ACG)DtRNA-Arg (Arg2), one of 6 nuclear tRNA genes containing the tDNA-anticodon ACG (converted to ICG in the mature tRNA), decodes CGU, CGC, and probably CGA codons into arginine, one of 19 nuclear tRNAs for arginine8.91---
TS(AGA)D1TS(AGA)D1tRNA-Ser3.37---
YBRCDELTA18YBRCDELTA1871.75---
YOR228CYOR228CmitochondrionUnclassified ProteinsProtein of unknown function6.752.432.342.04**
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Concentration of mRNA, linear scale, normalized to unit average:







hide correlation table
 Correlations in YMC:
RCS1RDN5-3TR(ACG)DTS(AGA)D1YBRCDELTA18YOR228C
RCS11.00-0.100.230.04-0.06-0.35
RDN5-3-0.101.000.060.160.310.43
TR(ACG)D0.230.061.000.64-0.05-0.41
TS(AGA)D10.040.160.641.00-0.04-0.29
YBRCDELTA18-0.060.31-0.05-0.041.000.33
YOR228C-0.350.43-0.41-0.290.331.00

 Correlations in cdc15:
RCS1RDN5-3TR(ACG)DTS(AGA)D1YBRCDELTA18YOR228C
RCS11.00ERRERRERRERR0.21
RDN5-3ERRERRERRERRERRERR
TR(ACG)DERRERRERRERRERRERR
TS(AGA)D1ERRERRERRERRERRERR
YBRCDELTA18ERRERRERRERRERRERR
YOR228C0.21ERRERRERRERR1.00

 Correlations in cdc28:
RCS1RDN5-3TR(ACG)DTS(AGA)D1YBRCDELTA18YOR228C
RCS11.00ERRERRERRERR-0.01
RDN5-3ERRERRERRERRERRERR
TR(ACG)DERRERRERRERRERRERR
TS(AGA)D1ERRERRERRERRERRERR
YBRCDELTA18ERRERRERRERRERRERR
YOR228C-0.01ERRERRERRERR1.00

 Correlations in alpha-38:
RCS1RDN5-3TR(ACG)DTS(AGA)D1YBRCDELTA18YOR228C
RCS11.00ERRERRERRERR-0.24
RDN5-3ERRERRERRERRERRERR
TR(ACG)DERRERRERRERRERRERR
TS(AGA)D1ERRERRERRERRERRERR
YBRCDELTA18ERRERRERRERRERRERR
YOR228C-0.24ERRERRERRERR1.00

UT MEDICAL BRANCH Citation YEAST.SWMED.EDU Otwinowski Lab Kudlicki Lab UT SOUTHWESTERN
2005-2010 Andrzej Kudlicki
a.kudlicki@utmb.edu