1 sample(s) found by the keyword GSM67630.


  1. GEO sample ID: GSM67630
    • Sample_geo_accession: GSM67630
    • Sample_status: Public on Aug 31 2006
    • Sample_submission_date: Aug 08 2005
    • Sample_last_update_date: Feb 21 2006
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: upf1- cell at time point 10
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Yeast strain S288C with wild type UPF1 ORF. Cells harvested at 10 minutes after transcription inhibition.
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: hot phenol protocol
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: cDNA was synthesized from 15ug total RNA from all samples using oligo(dT) primer. 5ul out of 12ul RnaseH-puri├×ed cDNA samples were used to synthesize biotinylated cRNA.
    • Sample_hyb_protocol: standard Affymetrix procedures
    • Sample_scan_protocol: standard Affymetrix procedures
    • Sample_description: Yeast cultures were grown to mid-log phase and harvested at 10 minutes after transcription inhibition by 10ug/ml thiolutin.
    • Sample_data_processing: Robust Multiarray Average
    • Sample_platform_id: GPL90
    • Sample_contact_name: Michael,,Culbertson
    • Sample_contact_email: mrculber@wisc.edu
    • Sample_contact_phone: 608-262-5388
    • Sample_contact_fax: 608-262-4570
    • Sample_contact_department: Genetics
    • Sample_contact_institute: University of Wisconsin
    • Sample_contact_address: 1525 Linden Drive
    • Sample_contact_city: Madison
    • Sample_contact_state: WI
    • Sample_contact_zip/postal_code: 53706
    • Sample_contact_country: USA
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67630/GSM67630.CEL.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67630/GSM67630.CHP.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67630/GSM67630.EXP.gz
    • Sample_series_id: GSE3076
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: wt 12 rep3
    ID_REF Corrected Value VALUE
    10000_at 2.1244 2.572
    10001_at 7.715 7.7501
    10002_i_at 10.419 10.5488
    10003_f_at 11.4697 11.492
    10004_at 3.9927 4.1933
    10005_at 7.2581 7.4031
    10006_at 5.9456 6.192
    10007_at 8.2808 8.5205
    10008_at 4.1227 4.4998
    10009_at 5.9643 6.1949
    View Full Table






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