1 sample(s) found by the keyword GSM67604.


  1. GEO sample ID: GSM67604
    • Sample_geo_accession: GSM67604
    • Sample_status: Public on Aug 31 2006
    • Sample_submission_date: Aug 08 2005
    • Sample_last_update_date: Feb 21 2006
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: upf1- cell at time point 35
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Yeast strain S288C with wild type UPF1 ORF. Cells harvested at 35 minutes after transcription inhibition.
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: hot phenol protocol
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: cDNA was synthesized from 15ug total RNA from all samples using oligo(dT) primer. 5ul out of 12ul RnaseH-puri├×ed cDNA samples were used to synthesize biotinylated cRNA.
    • Sample_hyb_protocol: standard Affymetrix procedures
    • Sample_scan_protocol: standard Affymetrix procedures
    • Sample_description: Yeast cultures were grown to mid-log phase and harvested at 35 minutes after transcription inhibition by 10ug/ml thiolutin.
    • Sample_data_processing: Robust Multiarray Average
    • Sample_platform_id: GPL90
    • Sample_contact_name: Michael,,Culbertson
    • Sample_contact_email: mrculber@wisc.edu
    • Sample_contact_phone: 608-262-5388
    • Sample_contact_fax: 608-262-4570
    • Sample_contact_department: Genetics
    • Sample_contact_institute: University of Wisconsin
    • Sample_contact_address: 1525 Linden Drive
    • Sample_contact_city: Madison
    • Sample_contact_state: WI
    • Sample_contact_zip/postal_code: 53706
    • Sample_contact_country: USA
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67604/GSM67604.CEL.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67604/GSM67604.CHP.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67604/GSM67604.EXP.gz
    • Sample_series_id: GSE3076
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: wt 40 rep1
    ID_REF Corrected Value VALUE
    10000_at 2.3321 2.5508
    10001_at 8.0727 8.1064
    10002_i_at 9.8805 9.9379
    10003_f_at 10.4826 10.509
    10004_at 2.7865 3.0228
    10005_at 6.8851 7.0125
    10006_at 4.8409 5.1154
    10007_at 8.8865 9.1331
    10008_at 4.5321 4.8597
    10009_at 5.5497 5.823
    View Full Table






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