1 sample(s) found by the keyword GSM67564.


  1. GEO sample ID: GSM67564
    • Sample_geo_accession: GSM67564
    • Sample_status: Public on Aug 31 2006
    • Sample_submission_date: Aug 08 2005
    • Sample_last_update_date: Feb 21 2006
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: upf1- cell at time point 6
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Yeast strain S288C with UPF1 ORF replaced by KanMX4. Cells harvested at 6 minutes after transcription inhibition.
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: hot phenol protocol
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: cDNA was synthesized from 15ug total RNA from all samples using oligo(dT) primer. 5ul out of 12ul RnaseH-puri├×ed cDNA samples were used to synthesize biotinylated cRNA.
    • Sample_hyb_protocol: standard Affymetrix procedures
    • Sample_scan_protocol: standard Affymetrix procedures
    • Sample_description: Yeast cultures were grown to mid-log phase and harvested at 6 minutes after transcription inhibition by 10ug/ml thiolutin.
    • Sample_data_processing: Robust Multiarray Average
    • Sample_platform_id: GPL90
    • Sample_contact_name: Michael,,Culbertson
    • Sample_contact_email: mrculber@wisc.edu
    • Sample_contact_phone: 608-262-5388
    • Sample_contact_fax: 608-262-4570
    • Sample_contact_department: Genetics
    • Sample_contact_institute: University of Wisconsin
    • Sample_contact_address: 1525 Linden Drive
    • Sample_contact_city: Madison
    • Sample_contact_state: WI
    • Sample_contact_zip/postal_code: 53706
    • Sample_contact_country: USA
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67564/GSM67564.CEL.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67564/GSM67564.CHP.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM67nnn/GSM67564/GSM67564.EXP.gz
    • Sample_series_id: GSE3076
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: mut 8 rep2
    ID_REF Corrected Value VALUE
    10000_at 2.251 2.5035
    10001_at 7.1524 7.1869
    10002_i_at 10.1166 10.1699
    10003_f_at 11.333 11.3181
    10004_at 3.2477 3.4942
    10005_at 7.1447 7.3179
    10006_at 5.5824 5.8626
    10007_at 8.5022 8.8207
    10008_at 4.8843 5.1973
    10009_at 5.9759 6.2241
    View Full Table






Developed by Dirar Homouz, Gang Chen, and Andrzej S. Kudlicki*

Software download