1 sample(s) found by the keyword GSM34697.


  1. GEO sample ID: GSM34697
    • Sample_geo_accession: GSM34697
    • Sample_status: Public on Nov 06 2004
    • Sample_submission_date: Nov 05 2004
    • Sample_last_update_date: Sep 08 2006
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: Yeast
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_molecule_ch1: total RNA
    • Sample_description: Experiment Design:
    • Sample_description: •Type of experiment: time course after GAL (galactose) induction
    • Sample_description: •Experimental factor: time, genotype
    • Sample_description: •Number of hybridizations performed in the experiment: 24 (eight conditions with three biological replicates each)
    • Sample_description:
    • Sample_description:
    • Sample_description: Samples used, extract preparation and labeling:
    • Sample_description: •The origin of the biological sample:
    • Sample_description: Species: S. cerevisiae
    • Sample_description: Cell type:
    • Sample_description: wild-type (YSS37, IFH1-13myc-TRP1, MATa)
    • Sample_description: UASIFH1::HIS3-UASGAL1 (YSS89, UASGAL1-IFH1-13myc-TRP1, MATa)
    • Sample_description: •Growth conditions: log phase (2x107/mL) at 30°C in YPLG medium, then addition of Galactose to 2%
    • Sample_description: •Treatments: all cells were harvested by rapid centrifugation at 4°C then flash frozen in liquid nitrogen.
    • Sample_description: •RNA extraction: RNeasy Protect mini kit (Quiagen)
    • Sample_description: •Labeling protocol(s):
    • Sample_description: cDNA synthesis using Invitrogen reagents according to Affymetrix protocol (5 µg of total RNA)
    • Sample_description: GeneChip IVT labeling kit (Affymetrix)
    • Sample_description: •External controls (spikes): according to the Affymetrix protocols
    • Sample_description: Hybridization controls
    • Sample_description: Poly-A spike controls
    • Sample_description: Keywords
    • Sample_description: Keywords
    • Sample_platform_id: GPL90
    • Sample_contact_name: Stephan,B.,Schawalder
    • Sample_contact_email: stephan.schawalder@molbio.unige.ch
    • Sample_contact_phone: +41 22 379 61 77
    • Sample_contact_laboratory: Group Shore
    • Sample_contact_department: Departement of Molecular biology
    • Sample_contact_institute: University of Geneva
    • Sample_contact_address: Quai Ansermet 30
    • Sample_contact_city: Geneva
    • Sample_contact_zip/postal_code: 1211
    • Sample_contact_country: Switzerland
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM34nnn/GSM34697/GSM34697.CEL.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM34nnn/GSM34697/GSM34697.EXP.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM34nnn/GSM34697/GSM34697.RPT.gz
    • Sample_series_id: GSE1934
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: YSS89, T=20, c
    ID_REF Corrected Value VALUE ABS_CALL
    AFFX-MurIL2_at 0 0.5 A
    AFFX-MurIL10_at 0.1 0.4 A
    AFFX-MurIL4_at 0.6 0.6 A
    AFFX-MurFAS_at 1.8 1 A
    AFFX-BioB-5_at 56.1 27 P
    AFFX-BioB-M_at 59.6 33 P
    AFFX-BioB-3_at 65.3 38.6 P
    AFFX-BioC-5_at 118.7 91.5 P
    AFFX-BioC-3_at 85.5 57.3 P
    AFFX-BioDn-5_at 127.2 96.7 P
    View Full Table






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