1 sample(s) found by the keyword GSM313535.


  1. GEO sample ID: GSM313535
    • Sample_geo_accession: GSM313535
    • Sample_status: Public on Jul 01 2009
    • Sample_submission_date: Aug 18 2008
    • Sample_last_update_date: Aug 19 2008
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: planktonic yeast, late exponential growth phase
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Strain: W303
    • Sample_characteristics_ch1: Medium: complete synthetic medium containing 2% glucose
    • Sample_molecule_ch1: polyA RNA
    • Sample_extract_protocol_ch1: Standard phenol-chloroform extraction from Schmitt, et al. (1990) Nucl. Acids Res, 18:3091-3092. PolyA RNA isolated using Oligotex mRNA kit from Qiagen.
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: Biotinylated cRNA were prepared from 2 micrograms polyA RNA using the BioArray HighYield RNA Transcript Labeling Kit (Enzo, Farmingdale, NY).
    • Sample_hyb_protocol: 15 micrograms cRNA was hybridized to Affymetrix S98 arrays following the manufacturer's protocols.
    • Sample_scan_protocol: Arrays were scanned on a GenePix 4000B scanner.
    • Sample_description: [gar-] W303 yeast grown in 2% glucose medium to late exponential phase.
    • Sample_data_processing: Data were condensed with MAS5 using default settings then processed using GCOS using deafult settings. The scale factor was set to 500.
    • Sample_platform_id: GPL90
    • Sample_contact_name: Jessica,C. S.,Brown
    • Sample_contact_laboratory: Lindquist
    • Sample_contact_department: biology
    • Sample_contact_institute: Whitehead/MIT
    • Sample_contact_address: 9 Cambridge Center
    • Sample_contact_city: Cambridge
    • Sample_contact_state: MA
    • Sample_contact_zip/postal_code: 02142
    • Sample_contact_country: USA
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM313nnn/GSM313535/GSM313535.CEL.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM313nnn/GSM313535/GSM313535.CHP.gz
    • Sample_series_id: GSE12479
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: [GAR+] sample #1
    ID_REF Corrected Value VALUE ABS_CALL
    AFFX-MurIL2_at 0.348042 2.30254 A
    AFFX-MurIL10_at 1.27597 2.02742 A
    AFFX-MurIL4_at 6.45589 6.42342 A
    AFFX-MurFAS_at 9.83599 5.91369 A
    AFFX-BioB-5_at 151.267 65.0863 P
    AFFX-BioB-M_at 178.172 99.3614 P
    AFFX-BioB-3_at 165.017 89.0901 P
    AFFX-BioC-5_at 252.501 175.045 P
    AFFX-BioC-3_at 301.446 219.892 P
    AFFX-BioDn-5_at 440.644 358.368 P
    View Full Table






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