1 sample(s) found by the keyword GSM239658.


  1. GEO sample ID: GSM239658
    • Sample_geo_accession: GSM239658
    • Sample_status: Public on Oct 26 2007
    • Sample_submission_date: Oct 25 2007
    • Sample_last_update_date: Oct 25 2007
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: spt3 strain
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: MATα ura3-52 trp1 leu2Δ::PET56 gcn4 gal2 spt3::TRP1
    • Sample_growth_protocol_ch1: Cells were grown for 24 hr at 30°C in liquid glucose-rich medium and then transferred at an OD600 of 0.2 to 37.5°C (restrictive temperature). RNA was extracted when the cells were at an OD600 of 0.8.
    • Sample_molecule_ch1: polyA RNA
    • Sample_extract_protocol_ch1: acid phenol method
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: standard Affymetrix procedure
    • Sample_hyb_protocol: standard Affymetrix procedure
    • Sample_scan_protocol: scan analyzed by Affymetrix' MicroArraySuite, MicroDB and DataMiningTool
    • Sample_description: na
    • Sample_data_processing: Signal intensities from CHP using ArrayAssist v2.6. Significance level set to P=0.05. Only mRNAs expressed at similar levels in the duplicate samples which were also signicantly different in the other strains were analyzed.
    • Sample_platform_id: GPL90
    • Sample_contact_name: Martine,,Collart
    • Sample_contact_email: martine.collart@unige.ch
    • Sample_contact_department: Microbiology and Molecular Medicine
    • Sample_contact_institute: University of Geneva
    • Sample_contact_address: Rue Michel-Servet 1, Centre Médical Universitaire
    • Sample_contact_city: Geneva
    • Sample_contact_zip/postal_code: 1206
    • Sample_contact_country: Switzerland
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM239nnn/GSM239658/GSM239658.cel.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM239nnn/GSM239658/GSM239658.chp.gz
    • Sample_series_id: GSE9432
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: spt3_rep2
    ID_REF Corrected Value VALUE ABS_CALL
    AFFX-MurIL2_at 0.160392 7.61945 A
    AFFX-MurIL10_at 0.312703 1.0251 A
    AFFX-MurIL4_at 2.43924 2.26697 A
    AFFX-MurFAS_at 5.55259 2.97078 A
    AFFX-BioB-5_at 147.673 114.009 P
    AFFX-BioB-M_at 221.746 189.476 P
    AFFX-BioB-3_at 180.781 151.834 P
    AFFX-BioC-5_at 255.752 227.212 P
    AFFX-BioC-3_at 266.561 236.315 P
    AFFX-BioDn-5_at 298.553 272.287 P
    View Full Table






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