1 sample(s) found by the keyword GSM206382.


  1. GEO sample ID: GSM206382
    • Sample_geo_accession: GSM206382
    • Sample_status: Public on Jun 29 2007
    • Sample_submission_date: Jun 28 2007
    • Sample_last_update_date: Jun 28 2007
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: Yeast harboring empty vector
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Yeast strain BY4741
    • Sample_growth_protocol_ch1: Yeast were grown in synthetic dextrose media, logarithmically growing, 30 degrees centigrade
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: Extraction of total RNA using Ambion RiboPure-Yeast protocol according to the manufacturer's instructions.
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, revision 4, Affymetrix).
    • Sample_hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Yeast Genome Array YG-s98. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
    • Sample_scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
    • Sample_description: Gene expression data from yeast containing empty vector
    • Sample_data_processing: The data were analyzed with GeneChip Operating Software version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
    • Sample_platform_id: GPL90
    • Sample_contact_name: Geoffrey,,Neale
    • Sample_contact_email: geoffrey.neale@stjude.org
    • Sample_contact_institute: St Jude Childrens Research Hospital
    • Sample_contact_address: 332 N Lauderdale St
    • Sample_contact_city: Memphis
    • Sample_contact_state: TN
    • Sample_contact_zip/postal_code: 38105
    • Sample_contact_country: USA
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM206nnn/GSM206382/GSM206382.CEL.gz
    • Sample_series_id: GSE8326
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: Empty vector, biological rep3
    ID_REF Corrected Value VALUE ABS_CALL
    AFFX-MurIL2_at 1.5 6.4 A
    AFFX-MurIL10_at 6.6 2.7 A
    AFFX-MurIL4_at 31.5 2.5 A
    AFFX-MurFAS_at 53.8 3.6 A
    AFFX-BioB-5_at 548.9 398.4 P
    AFFX-BioB-M_at 647.5 511.1 P
    AFFX-BioB-3_at 516.5 400.2 P
    AFFX-BioC-5_at 973.3 848.1 P
    AFFX-BioC-3_at 1229.2 1079.5 P
    AFFX-BioDn-5_at 1446.7 1309.3 P
    View Full Table






Developed by Dirar Homouz, Gang Chen, and Andrzej S. Kudlicki*

Software download