1 sample(s) found by the keyword GSM184946.


  1. GEO sample ID: GSM184946
    • Sample_geo_accession: GSM184946
    • Sample_status: Public on Oct 24 2007
    • Sample_submission_date: Apr 26 2007
    • Sample_last_update_date: Jul 10 2007
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: yeast, Control, t=6 min, replicate 1
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Strain BY4743
    • Sample_characteristics_ch1: Mid-exponental phase
    • Sample_treatment_protocol_ch1: In mid-exponential phase (OD600 ~ 1.5), three replicate cultures were treated with 0.19 mM CHP, while three untreated cultures were used as controls.
    • Sample_growth_protocol_ch1: Yeast cultures were grown in controlled batch conditions, in 1 L fermentors at 30C, pH 6.0, 500 rpm, and dO2> 80%.
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: RNA was extracted with a procedure modified from the hot phenol protocol, as described (Martins, A. et al (2007) Yeast 24, 181-188)
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
    • Sample_hyb_protocol: Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Yeast S98 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 640.
    • Sample_scan_protocol: GeneChips were scanned using the Affymetrix 7G Scanner.
    • Sample_description: Control (untreated culture), collected at t=6 min (after adding CHP to treated cultures), biological replicate 1
    • Sample_data_processing: The data were normalized with RMA.
    • Sample_platform_id: GPL90
    • Sample_contact_name: Vladimir,,Shulaev
    • Sample_contact_email: vshulaev@vbi.vt.edu
    • Sample_contact_institute: Virginia Bioinformatics Institute
    • Sample_contact_address: Virginia Bioinformatics Inst., Virginia Tech, Washington st.
    • Sample_contact_city: Blacksburg
    • Sample_contact_state: VA
    • Sample_contact_zip/postal_code: 24061
    • Sample_contact_country: USA
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM184nnn/GSM184946/GSM184946.CEL.gz
    • Sample_series_id: GSE7645
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: Control, t=12 min, biological replicate 1
    ID_REF Corrected Value VALUE
    10000_at 4.148635394 3.293133429
    10001_at 7.044668343 6.904238796
    10002_i_at 9.597641283 9.580948057
    10003_f_at 11.48476464 11.48431872
    10004_at 3.059063857 3.372041902
    10005_at 7.127047838 7.529396408
    10006_at 3.162648777 6.074340623
    10007_at 8.498522613 8.79539188
    10008_at 2.303253171 4.602685791
    10009_at 2.627623461 5.434569728
    View Full Table






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