1 sample(s) found by the keyword GSM176900.


  1. GEO sample ID: GSM176900
    • Sample_geo_accession: GSM176900
    • Sample_status: Public on Oct 11 2007
    • Sample_submission_date: Mar 22 2007
    • Sample_last_update_date: Oct 10 2007
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: Yeast RNA
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: PY015 (mutant Histone H2A^4-20)
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: Cells were grown in YPD media until mid-log phase. Cells were harvested at OD600 of 0.5-0.7. Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
    • Sample_hyb_protocol: standard Affymetrix procedures
    • Sample_scan_protocol: standard Affymetrix procedures
    • Sample_description: Mutant yeast strain Histone H2A^4-20
    • Sample_data_processing: Affymetrix Microarray Suite version 5.0.
    • Sample_platform_id: GPL90
    • Sample_contact_name: John,J.,Wyrick
    • Sample_contact_email: jwyrick@wsu.edu
    • Sample_contact_phone: 509-335-8785
    • Sample_contact_fax: 509-335-9688
    • Sample_contact_department: Molecular Biosciences
    • Sample_contact_institute: Washington State University
    • Sample_contact_address: Fulmer Hall 675
    • Sample_contact_city: Pullman
    • Sample_contact_state: WA
    • Sample_contact_zip/postal_code: 99164
    • Sample_contact_country: USA
    • Sample_contact_web_link: www.wsu.edu/~jwyrick
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM176nnn/GSM176900/GSM176900.CEL.gz
    • Sample_series_id: GSE7337
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: Mutant Histone H2A K4,7G replicate 1
    ID_REF Corrected Value VALUE ABS_CALL
    AFFX-MurIL2_at 0 0.9 A
    AFFX-MurIL10_at 0.5 0.7 A
    AFFX-MurIL4_at 2.1 0.9 A
    AFFX-MurFAS_at 4.4 2.2 A
    AFFX-BioB-5_at 60.5 28.9 P
    AFFX-BioB-M_at 56.6 27.7 P
    AFFX-BioB-3_at 50.8 23 P
    AFFX-BioC-5_at 82.4 52.9 P
    AFFX-BioC-3_at 79.4 48.2 P
    AFFX-BioDn-5_at 113.8 81.5 P
    View Full Table






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