1 sample(s) found by the keyword GSM153909.


  1. GEO sample ID: GSM153909
    • Sample_geo_accession: GSM153909
    • Sample_status: Public on Jan 06 2007
    • Sample_submission_date: Jan 04 2007
    • Sample_last_update_date: Jan 05 2007
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: Wild-type yeast strain HFY114
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Genotype, WT
    • Sample_treatment_protocol_ch1: none
    • Sample_growth_protocol_ch1: Cells were grown in YEPD at 30°C
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: Hot phenol
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
    • Sample_hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Yeast YG-S98 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
    • Sample_scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
    • Sample_description: Wild-type yeast strain HFY114
    • Sample_data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
    • Sample_platform_id: GPL90
    • Sample_contact_name: Feng,,He
    • Sample_contact_email: feng.he@umassmed.edu
    • Sample_contact_phone: 508-856-3931
    • Sample_contact_fax: 508-856-5920
    • Sample_contact_department: Molecular Genetics and Microbiology
    • Sample_contact_institute: University of Massachusetts Medical School
    • Sample_contact_address: 55 Lake Avenue North
    • Sample_contact_city: Worcester
    • Sample_contact_state: MA
    • Sample_contact_zip/postal_code: 01655
    • Sample_contact_country: USA
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM153nnn/GSM153909/GSM153909.CEL.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM153nnn/GSM153909/GSM153909.EXP.gz
    • Sample_series_id: GSE6647
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: B-edc3D, biological replicate 2
    ID_REF Corrected Value VALUE ABS_CALL
    10000_at 10 4.3 P
    10001_at 227 213.8 P
    10002_i_at 1258 1250 A
    10003_f_at 3280.5 3270.1 P
    10004_at 0.9 4.2 A
    10005_at 156 188.4 P
    10006_at 15.3 76.7 P
    10007_at 312.1 357.2 P
    10008_at 0.1 1.4 A
    10009_at 13 63.6 P
    View Full Table






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