1 sample(s) found by the keyword GSM146305.- GEO sample ID: GSM146305
- Sample_geo_accession: GSM146305
- Sample_status: Public on Aug 01 2007
- Sample_submission_date: Nov 20 2006
- Sample_last_update_date: Mar 05 2007
- Sample_type: RNA
- Sample_channel_count: 1
- Sample_source_name_ch1: Yeast RNA
- Sample_organism_ch1: Saccharomyces cerevisiae
- Sample_characteristics_ch1: AMY006 (mutant Histone H3 K4,79R)
- Sample_molecule_ch1: total RNA
- Sample_extract_protocol_ch1: Cells were grown in YPD media until mid-log phase. Cells were harvested at OD600 of 0.5-0.7. Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
- Sample_label_ch1: biotin
- Sample_label_protocol_ch1: Approximately 20 ug of total RNA was processed to produce biotinylated cRNA targets.
- Sample_hyb_protocol: standard Affymetrix procedures
- Sample_scan_protocol: standard Affymetrix procedures
- Sample_description: Mutant yeast strain Histone H3 K4,79R
- Sample_data_processing: Affymetrix Microarray Suite version 5.0. Data has been normalized using exogenous spiked controls (DapX, LysX, PheX, ThrX, TrpX)
- Sample_platform_id: GPL90
- Sample_contact_name: John,J.,Wyrick
- Sample_contact_email: jwyrick@wsu.edu
- Sample_contact_phone: 509-335-8785
- Sample_contact_fax: 509-335-9688
- Sample_contact_department: Molecular Biosciences
- Sample_contact_institute: Washington State University
- Sample_contact_address: Fulmer Hall 675
- Sample_contact_city: Pullman
- Sample_contact_state: WA
- Sample_contact_zip/postal_code: 99164
- Sample_contact_country: USA
- Sample_contact_web_link: www.wsu.edu/~jwyrick
- Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM146nnn/GSM146305/GSM146305.CEL.gz
- Sample_series_id: GSE6319
- Sample_series_id: GSE6331
- Sample_data_row_count: 9335
- Sample_comment: Raw data provided as supplementary file
- sample_table_begin:
- sample_table_end:
- Sample_title: Mutant Histone H3 K4,79R replicate 3
ID_REF | Corrected Value | VALUE | ABS_CALL |
AFFX-MurIL2_at | 0 | 0.981606054 | A |
AFFX-MurIL10_at | 0.327202018 | 0.436269357 | A |
AFFX-MurIL4_at | 2.508548803 | 0.545336696 | A |
AFFX-MurFAS_at | 5.017097607 | 1.854144768 | A |
AFFX-BioB-5_at | 66.53107696 | 28.24844087 | P |
AFFX-BioB-M_at | 86.27226537 | 51.80698616 | P |
AFFX-BioB-3_at | 71.22097255 | 38.93704012 | P |
AFFX-BioC-5_at | 112.3393595 | 79.61915767 | P |
AFFX-BioC-3_at | 127.8269216 | 91.61656499 | P |
AFFX-BioDn-5_at | 234.3857121 | 196.2121434 | P |
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