1 sample(s) found by the keyword GSM146304.


  1. GEO sample ID: GSM146304
    • Sample_geo_accession: GSM146304
    • Sample_status: Public on Aug 01 2007
    • Sample_submission_date: Nov 20 2006
    • Sample_last_update_date: Mar 05 2007
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: Yeast RNA
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: AMY006 (mutant Histone H3 K4,79R)
    • Sample_molecule_ch1: total RNA
    • Sample_extract_protocol_ch1: Cells were grown in YPD media until mid-log phase. Cells were harvested at OD600 of 0.5-0.7. Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
    • Sample_label_ch1: biotin
    • Sample_label_protocol_ch1: Approximately 20 ug of total RNA was processed to produce biotinylated cRNA targets.
    • Sample_hyb_protocol: standard Affymetrix procedures
    • Sample_scan_protocol: standard Affymetrix procedures
    • Sample_description: Mutant yeast strain Histone H3 K4,79R
    • Sample_data_processing: Affymetrix Microarray Suite version 5.0. Data has been normalized using exogenous spiked controls (DapX, LysX, PheX, ThrX, TrpX)
    • Sample_platform_id: GPL90
    • Sample_contact_name: John,J.,Wyrick
    • Sample_contact_email: jwyrick@wsu.edu
    • Sample_contact_phone: 509-335-8785
    • Sample_contact_fax: 509-335-9688
    • Sample_contact_department: Molecular Biosciences
    • Sample_contact_institute: Washington State University
    • Sample_contact_address: Fulmer Hall 675
    • Sample_contact_city: Pullman
    • Sample_contact_state: WA
    • Sample_contact_zip/postal_code: 99164
    • Sample_contact_country: USA
    • Sample_contact_web_link: www.wsu.edu/~jwyrick
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM146nnn/GSM146304/GSM146304.CEL.gz
    • Sample_series_id: GSE6319
    • Sample_series_id: GSE6331
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: Mutant Histone H3 K4,79R replicate 2
    ID_REF Corrected Value VALUE ABS_CALL
    AFFX-MurIL2_at 1.014348749 3.319686816 A
    AFFX-MurIL10_at 3.965181474 2.213124544 A
    AFFX-MurIL4_at 9.682419879 3.227473293 M
    AFFX-MurFAS_at 12.17218499 2.213124544 A
    AFFX-BioB-5_at 73.58639108 38.82189304 P
    AFFX-BioB-M_at 84.55980027 56.06582177 P
    AFFX-BioB-3_at 78.19706721 49.97972928 P
    AFFX-BioC-5_at 88.24834118 58.92444098 P
    AFFX-BioC-3_at 100.0516721 66.85480393 P
    AFFX-BioDn-5_at 175.4823336 140.441195 P
    View Full Table






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