1 sample(s) found by the keyword GSM138689.


  1. GEO sample ID: GSM138689
    • Sample_geo_accession: GSM138689
    • Sample_status: Public on Jun 25 2008
    • Sample_submission_date: Oct 05 2006
    • Sample_last_update_date: Jun 23 2008
    • Sample_type: RNA
    • Sample_channel_count: 1
    • Sample_source_name_ch1: Baker's yeast
    • Sample_organism_ch1: Saccharomyces cerevisiae
    • Sample_characteristics_ch1: Dry 2h-2
    • Sample_treatment_protocol_ch1: The compressed yeast cells were put on the alminium tray, and dried by air blow at 37degree in dry oven.
    • Sample_growth_protocol_ch1: Fed-batch culture
    • Sample_molecule_ch1: polyA RNA
    • Sample_extract_protocol_ch1: Poly A RNA was enriched from total RNA with Oligotex dT30.
    • Sample_label_ch1: The biotinyated RNA
    • Sample_label_protocol_ch1: Accoding to the Affymetrix user's mannual
    • Sample_hyb_protocol: At 45degree for 16-18h
    • Sample_scan_protocol: GeneChip scanner
    • Sample_description: Normalized ratio data included in supplementary file:
    • Sample_description: Values below 0.01 were set to 0.01. Each measurement was divided by the 50.0th percentile of all measurements in that sample. Specific samples were normalized to one another: All samples (1h, 2h, 4h, and 8h samples) were normalized against the median of the control samples (0h sample). Each measurement for each gene in those specific samples was divided by the median of that gene's measurements in the corresponding control samples. "Normalization value
    • Sample_description: The value of "control" column is calculated as follows: Normalization value was decided from intensity of raw accoring to the Normalization scenario of 1. After that, control value was calculated from this formula, "Normalization value
    • Sample_data_processing: GeneChip operating system (GCOS)
    • Sample_platform_id: GPL90
    • Sample_contact_name: Yoshinori,,Murata
    • Sample_contact_email: muratayo@affrc.go.jp
    • Sample_contact_phone: +81-29-838-6623
    • Sample_contact_fax: +81-29-838-6623
    • Sample_contact_department: Post-harvest Science and Technology Division
    • Sample_contact_institute: Japan International Research Center for Agricultural Science
    • Sample_contact_address: 1-1 Ohwashi
    • Sample_contact_city: Tsukuba
    • Sample_contact_state: Ibaraki
    • Sample_contact_zip/postal_code: 305-8686
    • Sample_contact_country: Japan
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138689/GSM138689, 2h-2.txt.gz
    • Sample_supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM138nnn/GSM138689/GSM138689.CEL.gz
    • Sample_series_id: GSE6454
    • Sample_data_row_count: 9335
    • Sample_comment: Raw data provided as supplementary file
    • sample_table_begin:
    • sample_table_end:
    • Sample_title: Dehydration of baker's yeast at 4h-1
    ID_REF Corrected Value VALUE ABS_CALL
    AFFX-MurIL2_at 1.7 5.3 A
    AFFX-MurIL10_at 14.1 35.1 A
    AFFX-MurIL4_at 9.3 4.7 A
    AFFX-MurFAS_at 56.5 47.6 A
    AFFX-BioB-5_at 110.5 39.9 A
    AFFX-BioB-M_at 94.7 31.1 A
    AFFX-BioB-3_at 136.7 69.8 P
    AFFX-BioC-5_at 212.4 146.8 P
    AFFX-BioC-3_at 191.3 124.3 P
    AFFX-BioDn-5_at 199.2 128.7 P
    View Full Table






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